Gene putatively regulated by attenuation in B_cereus_ATCC14579
Characteristics of the secondary structures
Terminator: Distance to gene:112 nt. Distance to run of Ts=0 nt. Size=24 nt. Delta G=-14.10 kcal/mol
Antiterminator: Size=75 nt. Delta G= -7.03 kcal/mol
Anti-antiterminator: Size=35 nt. Delta G= -3.22 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
TAAAGGGGAAAAAGGCACAATTGATTTTTGGAGATCCAATTCAAATTGAGGCTGGAGA
ACAAATAGATCGAAAAACCGCTATGAAAATGATGACGGATCAATTAAATGAGAAGTTT
GAGGAGTTAAAAGAAGCTTTGCAATCAAATCAAAAATAAgaaaagacgaccgggcatagacggtcgtcttt
tctattactatttataataaaggggaaaggggacacaaagttatacaagcgtagcggcgtaaataaaagcagtaagaagaatcgagccactagctagtcc
taaaaaatctaatTTG
BC0229
Gene: BC0229 GI: 30018466 BI number: BC0229 GOG: ------- Description: hypothetical protei
A
A G
GC
AT
AT
AT
A G
T C
T A
G A
AT
GC
| A
| A
G A
AT
GC
TA
TA
TA
G A
A A
G A T
T A G A
A G A A
A A G g
A A T a
T G A a
T T A a at
AT A a c a
AT T g g g
CG T a g a
TA A c gc
A G A | cg
G G Cg cg
G A Ta at
CG A | gc
AT Gc cg
GT Gc at
TA Cg gc
ttttctattactatttataataaaggggaaaggggacacaaagttatacaagcgtagcggcgtaaataaaagcagtaagaagaatcgagccactagctagtcctaaaaaatctaatTTG
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