                                                                        Gene putatively regulated by attenuation in B_cereus_ATCC14579

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:77 nt.     Distance to run of Ts=0 nt.   Size=29 nt.     Delta G=-15.40 kcal/mol
Antiterminator: Size=43 nt.     Delta G= -7.50 kcal/mol
Anti-antiterminator:   Size=48 nt.     Delta G=-12.10 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

GCATCATCAGCGGTAAGTGTAAGTGGAGAACCAGTTGATCTTGGATTTACGATTGGTG
CATTAACGAAAGACTCTGTAACGTGGTCGCATAACGGAGTAGAATATATGCTCGTGTC
TAAAGGTTTAGAGCCGAAGGAGCTGTTAATGGTTGCTCGTTCAGTTACAGCGAAGCAG
GTGAAGTAAacttcttagacgtggtgatatatgtgcaccacgtcttttcttagtttgaaggtggatttcataaaagaagcatataaaagaataa
gcttcgcatatcgtgtataaggaagtgtatttATG

    BC0264 Gene: BC0264     GI: 30018501     BI number: BC0264     GOG: COG0787     Description: Alanine racemas CT         G G  C      A  T T  G      A  A T  T      G  A GT        Ta GC        Gc TA        Gt A  G       At A  T      C  | T  T       Gc         a TA        At       t  t GC        At       a  g TA       |  a      t  t CG       |  g      a  g GC       |  a       gc A  G       Gc        ta G  A       Cg        gc G  A       Gt        gc A  G      A  g       ta A  C       Cg        gc G  A       At        cg CG        Tg        at CG        Ta        gc GT        Gt        at                         tttcttagtttgaaggtggatttcataaaagaagcatataaaagaataagcttcgcatatcgtgtataaggaagtgtatttATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [M] COG0787 Alanine racemase ... can be seen here     ..................................................................................................................