                                                                        Gene putatively regulated by attenuation in B_cereus_ATCC14579

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:103 nt.     Distance to run of Ts=1 nt.   Size=20 nt.     Delta G= -7.00 kcal/mol
Antiterminator: Size=39 nt.     Delta G= -6.70 kcal/mol
Anti-antiterminator:   Size=73 nt.     Delta G=-15.30 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

atgtattttgctataataaaaccagcattcatttaataacttaatttgataccggtttttttcgaaatatgcacgttgcatttgtttttttagccacgta
ggcataggaatccctccttgtttaatcctgctctcaaaaatctaaaatgctattgatgagaggttggtgagtggatttctattcatgttttgtttttaga
aaccacgcttcttacatgaggatgggtatatgtactatttaatatatgtataagaagggagaaaagtgtaaaaatatttttttgtttaggaggaatgaga
GTG

    BC0268 Gene: BC0268     GI: 30018505     BI number: BC0268     GOG: COG3091     Description: Zinc metalloproteas   c t  c a  c at gc gc at t  | at cg gt gt at ta |  a g  t c  c a  c c  t cg gc         a at       t  t |  c      c  t t  t      g  g t  c       ta ta        at ta       a  g ta       a  a ta       a  g ta        ta gt        cg        tt |  c       tg       a  t |  t       at        gc |  a       at        gt ta       a  g       ta ta       a  g       gt ta        at        at at        cg        gc cg        ta        ta gc        cg        gt                         gttttgtttttagaaaccacgcttcttacatgaggatgggtatatgtactatttaatatatgtataagaagggagaaaagtgtaaaaatatttttttgtttaggaggaatgagaGTG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [S] COG3091 Uncharacterized protein conserved in bacteria ... can be seen here     ..................................................................................................................