Gene putatively regulated by attenuation in B_cereus_ATCC14579
Characteristics of the secondary structures
Terminator: Distance to gene:203 nt. Distance to run of Ts=0 nt. Size=22 nt. Delta G=-13.70 kcal/mol
Antiterminator: Size=34 nt. Delta G= -5.50 kcal/mol
Anti-antiterminator: Size=53 nt. Delta G= -3.24 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
aacaaaccctaattctgtaccttccaattttgtataacgtagaatccaatgtttgttaagtagagtaatggaccaggagttttcctggtctttttttatg
aatgaaaatagctagcgaacagtaaggtaatctgaaaaaccaattgtttagattgttttttcagattaggcagaaaactttctttaaaatagtattcttt
tatgatagatttataaatataaaactagaatttacataaaaatccatcatggtaaatatacttatctataatgggtatacagctaacgagggggagaacg
ATG
BC0349
Gene: BC0349 GI: 30018557 BI number: BC0349 GOG: ------- Description: hypothetical protei
tt
a t
at
cg
c t
t a
t t
c a
c a
a c a
t g t g
gt g a
ta a g
cg at
ta ta
ta ta
at g t tt
| c t g g t
a c tg a t
t a ta gc
c a gc gc
c t t c at
cg a a cg
at a | cg
at cg at
at cg gc
cg ta gt
ttttttatgaatgaaaatagctagcgaacagtaaggtaatctgaaaaaccaattgtttagattgttttttcagattaggcagaaaactttctttaaaatagtattcttttatgatagatttataaatataaaactagaatttacataaaaatccatcatggtaaatatacttatctataatgggtatacagctaacgagggggagaacgATG
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