Gene putatively regulated by attenuation in B_cereus_ATCC14579
Characteristics of the secondary structures
Terminator: Distance from promoter:40 nt. Distance to gene:102 nt. Distance to run of Ts=0 nt. Size=26 nt. Delta G=-12.10 kcal/mol
Antiterminator: Distance from promoter:20 nt. Size=25 nt. Delta G= -4.20 kcal/mol
Anti-antiterminator: Size=75 nt. Delta G= -6.35 kcal/mol
Nomenclature/Definitions
The most likely promoter is: TTTCAA-TATTGT. It has a score value of 60.91 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
TTTCAAGCATTTTGTATTCTTTTTATTGTTTTGGGTGTCATTGGGCTTAAGGTTTCAT
CGGCATCATGAaagctatcttttgtagaagatagcttttttctatttgtgcagttaacaattaatacgacaaaatatgacaagaaagagtaa
agcgttttgttatgatacatatgaaatattgtcttatgtggaggaaagagtATG
BC0359
Gene: BC0359 GI: 30018567 BI number: BC0359 GOG: ------- Description: IG hypothetical 1796
T
A T
T G
T T
T T
T T
T T
CG
TG
TG
AT
TG
| T
GC
TA
T T
T T
T G
A G
CG
GC
AT
AT
C A
TA
TG
TG
AT C gt
T T G A t a
T T G T tg
T C C C ta
G A TA ta
A T AT cg
T C CG ta
T G TA at
A | Ta ta
T | Ta cg
A | G g gc
CG Gc at
GC At at
ttttctatttgtgcagttaacaattaatacgacaaaatatgacaagaaagagtaaagcgttttgttatgatacatatgaaatattgtcttatgtggaggaaagagtATG
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