                                                                        Gene putatively regulated by attenuation in B_cereus_ATCC14579

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:111 nt.     Distance to run of Ts=0 nt.   Size=33 nt.     Delta G=-11.60 kcal/mol
Antiterminator: Size=50 nt.     Delta G= -4.35 kcal/mol
Anti-antiterminator:   Size=64 nt.     Delta G= -7.76 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

AGCAATTGCTGAAGAAACGTCAGCTGGTTCGCAAGAAGTAGCACGTGTGACGCTACAA
CAATCTAAAAATATGATAGTAATCGATCAATTATTAAAGGATTTAGAGAAGCAAGCAA
CTGATTTGAAACAAACAATTGAACGATTTTCAATGTAAaaggaagaacagaatattgttcttctctttttta
tttagcttgatttaatatttacagttaaactatgaacgtttccgcaacattcttttctgtccctttcggatgaaaattatagcgagctataatattaaaa
ggggtgtcttttATG

    BC0405 Gene: BC0405     GI: 30018613     BI number: BC0405     GOG: COG1438     Description: Arginine repressor, arg   G A  C A  A C  A GC AT A  G G  A AT         A GT       G  T AT       C  T TG        AT TA        AT TA        GC A  A       TA G  C       TA G  A       AT A  A      A  G       at A  A      C  T      a  a A  C      A  A       gt T  |      A  A       at T  |      A  a       cg A  |      C  a       at TA       A  g       at TA       A  g       gc AT       A  a       at AT       G  a       at CG        Tg        gc TA        Ta       |  t A  A       Ta        gc GC       A  |       at CG        Gc        at TA        Ta        At AT        Cg        At                         ttatttagcttgatttaatatttacagttaaactatgaacgtttccgcaacattcttttctgtccctttcggatgaaaattatagcgagctataatattaaaaggggtgtcttttATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [K] COG1438 Arginine repressor ... can be seen here     ..................................................................................................................