Gene putatively regulated by attenuation in B_cereus_ATCC14579
Characteristics of the secondary structures
Terminator: Distance to gene:84 nt. Distance to run of Ts=0 nt. Size=26 nt. Delta G= -9.90 kcal/mol
Antiterminator: Size=70 nt. Delta G= -9.80 kcal/mol
Anti-antiterminator: Size=54 nt. Delta G= -5.20 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
ATTGAAATATCCAAAATATCTGGAACATCTCGAGAGACAGTTAGCAGCGTATTAAAAC
AATTAAAAAATGATAGCATTGTTACAATTTTAGATAAAAAAATTACAATACATGATCC
AACATATTTTGAAGAAATCTCTATGTGAaaattgtatattgattttttaattcatagtgtatattaataaggttcttta
tatatttataaggaacttttttacgttatcctctataaaaagattgtatagtatggtaataatagctaaaatcgataataaaatacaaagtgaaggggag
aaagaATG
BC0411
Gene: BC0411 GI: 30018619 BI number: BC0411 GOG: ------- Description: hypothetical protei
tt
t t
at
gt
ta
ta
at
t t
a c
ta
A gt
G A ta
A A tg
AT at
GC a g
T T a |
T C A |
T T Gt
TA Ta
AT Gt
TG Ta
AT At
CG | t
A A | a
A a | a
C a T t at
C | C a t t
Ta Ta at
At Cg ta
Gt Tg at
Tg A | ta
At At ta
C a At tg
At Gc cg
Ta At ta
At At ta
At Gt gc
Cg Ta gt
tttttacgttatcctctataaaaagattgtatagtatggtaataatagctaaaatcgataataaaatacaaagtgaaggggagaaagaATG
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