                                                                        Gene putatively regulated by attenuation in B_cereus_ATCC14579

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:79 nt.     Distance to run of Ts=0 nt.   Size=22 nt.     Delta G=-13.80 kcal/mol
Antiterminator: Size=67 nt.     Delta G=-12.21 kcal/mol
Anti-antiterminator:   Size=63 nt.     Delta G=-11.90 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

TATGGGGGCAATGCTAATTGGAACTTCACTAGCTGGAGGATTAAAGGAACTAACTTCA
CTAGTTACTGTGTTTTGTATAGCAATGGCACTTATTTTATTAGCGATAGGGCCAGTTC
TACGTATGCAAATAAAAAAAGAAGATGTTGCTAATAAAGAGGCACTAACAAATTCGTT
AGCTTCGAAATAActattgtaagggagcaatattgctccctttttctttgaggaacttttgacaactatatgagccaattatatactgatg
ttgtaaaaacgattttacaggttaggagcaatggtGTG

    BC0435 Gene: BC0435     GI: 30018643     BI number: BC0435     GOG: COG1476     Description: Transcriptional regulator, PBSX famil            AT           A  T           A  C            CG            AT            AT CA        TA G  A      C  | TA       A  | AT        CG TA        GC |  A       GT |  A       AT G  A       GC C  A      |  G A  A      |  A TA       |  A CG       |  A TA       |  T TA       |  A G  G      |  A A  A      |  c C  |      |  t C  |      |  a G  |      |  t G  |      |  t G  |      |  g AT       A  t TG       A  a AT       A  a GT       T  g       ta CG       A  g      a  t GC       A  g       at AT        Ta        cg TA        Cg        gc TA        Gc        at AT        Ta        gc TA        Ta        gc TA        Gt        gc TA        Ta        at TG        At        at                         tttctttgaggaacttttgacaactatatgagccaattatatactgatgttgtaaaaacgattttacaggttaggagcaatggtGTG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [K] COG1476 Predicted transcriptional regulators ... can be seen here     ..................................................................................................................