Gene putatively regulated by attenuation in B_cereus_ATCC14579
Characteristics of the secondary structures
Terminator: Distance to gene:202 nt. Distance to run of Ts=0 nt. Size=32 nt. Delta G=-16.90 kcal/mol
Antiterminator: Size=72 nt. Delta G= -6.95 kcal/mol
Anti-antiterminator: Size=20 nt. Delta G= -5.30 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
gttcccgcatactgcgcatgttgagaatgtacttagattaaatttgaaataaaaaggattaaaaatgttgatgtggttaactacatcaacattttttgtt
atgttagtagataaatcacgttacgtaatcaatatccatactttctgtatggattatatgaaattatttgctgcactcaaaaaaaatttgtaaaaatata
cagtgttcagattgtatagaccactctgtattaataaattacaatatggatgtaacatagcaaatttgctatagaaaataagctaaaagggagaagattt
ATG
BC0470
Gene: BC0470 GI: 30018677 BI number: BC0470 GOG: ------- Description: S-layer protein / N-acetylmuramoyl-L-alanine amidas
tg
a t
a a
gc
at
gt
ta
tg
| a
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| a
| a
| a
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| t
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| g
| a
| a
| a
| t
| a
| a
| a
| a
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| g
| g
| a
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| a
| a
g a ta
ta t a
at gc
cg gt
gt ta
a c t gc
t c g g ta
a t t | at
cg c | gc
gc a | ta
c | ta ta
cg at gc
Gc cg ta
Ta gt at
At cg at
tg cg at
tttgttatgttagtagataaatcacgttacgtaatcaatatccatactttctgtatggattatatgaaattatttgctgcactcaaaaaaaatttgtaaaaatatacagtgttcagattgtatagaccactctgtattaataaattacaatatggatgtaacatagcaaatttgctatagaaaataagctaaaagggagaagatttATG
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