                                                                        Gene putatively regulated by attenuation in B_cereus_ATCC14579

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:213 nt.     Distance to run of Ts=0 nt.   Size=32 nt.     Delta G=-15.80 kcal/mol
Antiterminator: Size=38 nt.     Delta G= -6.30 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

AAAAAATGATTTCAAATTTAGGATAAgatatattgttatctttaggtgaaaagtccttctttgtatggaaatagagaaggg
ctttttctattacatgtcctcgcttataaataatacagtacaatccttttatctcctaagaagcggtggggcatagtattcaacgataaacctcctacat
attcagtttgaaaaatagagtcttatccctttagttttaaaatttcgacaaaaaagttataatagaaaaaaagtgaatgccgttcaaagggcatttgcag
ttgaaagaagggagcatatATG

    BC0508 Gene: BC0508     GI: 30018714     BI number: BC0508     GOG: COG3557     Description: hypothetical protei tt a  g t  t at ta at gc At At        gg |  t      t  a |  a      a  a |  g       ta |  g       gt |  t       ta |  g       tg |  a       ta |  a       cg |  a       ta |  a       ta Tg        cg At        cg Gc        tg Gc        gc At        at             ttttctattacatgtcctcgcttataaataatacagtacaatccttttatctcctaagaagcggtggggcatagtattcaacgataaacctcctacatattcagtttgaaaaatagagtcttatccctttagttttaaaatttcgacaaaaaagttataatagaaaaaaagtgaatgccgttcaaagggcatttgcagttgaaagaagggagcatatATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [J] COG3557 Uncharacterized domain/protein associated with RNAses G and E ... can be seen here     ..................................................................................................................