                                                                        Gene putatively regulated by attenuation in B_cereus_ATCC14579

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:101 nt.     Distance to run of Ts=0 nt.   Size=24 nt.     Delta G=-14.20 kcal/mol
Antiterminator: Size=37 nt.     Delta G= -3.00 kcal/mol
Anti-antiterminator:   Size=64 nt.     Delta G= -7.20 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

AACAAATGGCTTACCAGCTAATGTAATCGAAGAAAACTTTGATCATTGTTTACGTATT
CCAATGACAGATAAAGTACGTTCATTAAATTTATCTAATACAGCAGCAATTTTAATTT
ATGAAGCGTTCCGTCAACAAAATTACCCTGGATTAGATTTAGAAATCGTTTATTAAaa
gtcgccatatggcgactttttttttataaaataaaaataatatataatcatacatttaaaagagaggacataatcatatagaatgggatatatgattaaa
aatagataagacgggttgagataaatATG

    BC0547 Gene: BC0547     GI: 30018735     BI number: BC0547     GOG: COG5001     Description: Sensory box/GGDEF family protei CG G  T A  T A  C GC TG AT T  C T  A T  A A  C A  | TA TA        GT TA       C  T TA       T  T AT       A  A AT        AT C  A       AT G  C      G  A A  C      A  A C  |       Ta        ta GC        Ta       a  t AT        Tg        cg CG        At        cg A  G       Gc        gc TA       A  g       cg AT       T  |       ta AT       T  |       gc TA       A  |       at CG        Gc        at TA        Gc        At AT        Ta        At                         tttttataaaataaaaataatatataatcatacatttaaaagagaggacataatcatatagaatgggatatatgattaaaaatagataagacgggttgagataaatATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [T] COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain ... can be seen here     ..................................................................................................................