                                                                        Gene putatively regulated by attenuation in B_cereus_ATCC14579

This operon is putativelly rgulated by Lysine_riboswitch

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:169 nt.     Distance to run of Ts=0 nt.   Size=27 nt.     Delta G= -6.90 kcal/mol
Antiterminator: Size=69 nt.     Delta G=-14.70 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

ttgataaatttctctgcatttatcaattggggctgttttcgaatagaaacagaactgtcatatgtacagacgtgtacgtatgaagagctatctacaaaaa
agagatatcattttttatgatattccttttttggcggtttttttattagctccgttttctgtttcccttttcctgtaacagcaccatcctcacttatttg
agatggtgttttttgtttgtctttctggtaactacaggagtattgggattgatatatttcctaatctattcttaaaaatagacgaaagaaggaatttgta
ATG

    BC1748 Gene: BC1748     GI: 30019892     BI number: BC1748     GOG: COG0527     Description: Aspartokinas ac g  g at cg at ta gc tg at ta at cg ta g  | ta cg a  a a  g gc at c  a a  | a  | at gc         t at       t  t ta       t  t |  c       ta |  a       at |  a       cg |  a       ta a  a       at a  a       ta g  a       at cg       g  t ta       a  c tg        gc ta        at             tttttggcggtttttttattagctccgttttctgtttcccttttcctgtaacagcaccatcctcacttatttgagatggtgttttttgtttgtctttctggtaactacaggagtattgggattgatatatttcctaatctattcttaaaaatagacgaaagaaggaatttgtaATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [E] COG0527 Aspartokinases ... can be seen here                                                                         Genes that have a predicted attenuator with a riboswitch: Lysine_riboswitch sequence ... can be seen here     ..................................................................................................................