Gene putatively regulated by attenuation in B_cereus_ATCC14579

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:79 nt.     Distance to run of Ts=0 nt.   Size=20 nt.     Delta G=-10.60 kcal/mol
Antiterminator: Size=65 nt.     Delta G= -8.86 kcal/mol
Anti-antiterminator:   Size=33 nt.     Delta G= -4.00 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

TCTCGTTGGCAATTATGTATGCTATTTTTTGCGCCAATTATAGTAGGGAGTATGCATA
GTGCAGTTGCATTATATACGTTTCATAATACGCTTTTTATGGATGGATCATTCAGAAA
AGTAGGTTTGTTCATTCTGTTTTATATCGCAGCATGTATCATTTATTTCTTCTTCGCT
CAAAGAGAGTATAAGAAACATTTAGACTAGcgaatgctagtcttttttaaatattcgaaatttacatagaagaatata
aaaaagtatggtataacagtaagaaaacgaaaaagaggggaaaagacgATG

    BC4427


Gene: BC4427     GI: 30022508     BI number: BC4427     GOG: COG0077     Description: Prephenate dehydratas


            A
          A  G
          A  A
           CG
           TA
           CG
           GT
          C  A
          T  T
          T  |
          C  |
           TA
           TA
           CG
           TA
           TA
           TA
          A  C
          T  A
 AT       T  T
T  A      T  T
T  T      A  T
T  C      C  A
 TG       T  G
 GC       A  |
 TA        TA
 CG        GC        aa
T  C      T  T      g  t
 TA       A  A       cg
 AT       C  |       Gc
 CG       G  |       At
|  T      A  |       Ta
T  A       CG        Cg
T  T       Gc        At
 GC        Cg        Gc
 TA        Ta        At
                        tttttaaatattcgaaatttacatagaagaatataaaaaagtatggtataacagtaagaaaacgaaaaagaggggaaaagacgATG
                                                                        Orthologous genes that have a predicted attenuator, grouped in COG families

[E] COG0077 Prephenate dehydratase ... can be seen here

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