                                                                        Gene putatively regulated by attenuation in B_cereus_ATCC14579

This operon is putativelly rgulated by Thiamine_Thi-box

                                                                        Characteristics of the secondary structures
Terminator:    Distance from promoter:154 nt.    Distance to gene:56 nt.     Distance to run of Ts=0 nt.   Size=34 nt.     Delta G=-22.50 kcal/mol
Antiterminator:    Distance from promoter:130 nt. Size=29 nt.     Delta G= -6.00 kcal/mol

                                                                        Nomenclature/Definitions
The most likely promoter is: ttgaat-tatgat. It has a score value of 78.98 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

ttgaatttttcagattatggtgtatgatgggaaagtattgaaaattaaatcagtgataaactaggggtgcctaacgtatgcgtaggctgagagagaagcg
cgtgaacttcttaaccctttggacctgatctggctcgtaccagcgtagggaagttaacggctttacataatgatgtctttatgagccaggtccttatttt
tttatggacctggctctttttattttggcatgcgctggccatatctcgtccttgtcacgaacaggggggcaataaaatttATG

    BC5227 Gene: BC5227     GI: 30023259     BI number: BC5227     GOG: COG0422     Description: Thiamine biosynthesis protein thi            tt tg       t  t a  t      t  t g  c       at t  t       ta at       t  t at        cg ta        cg at        ta cg        gc a  |       gc t  |       at t  |       cg ta        cg cg        gc gc        at gc        gc             tttttattttggcatgcgctggccatatctcgtccttgtcacgaacaggggggcaataaaatttATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [H] COG0422 Thiamine biosynthesis protein ThiC ... can be seen here                                                                         Genes that have a predicted attenuator with a riboswitch: Thiamine_Thi-box sequence ... can be seen here     ..................................................................................................................