                                                                        Gene putatively regulated by attenuation in B_cereus_ATCC14579_pl-pBClin15

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:0 nt.     Distance to run of Ts=1 nt.   Size=32 nt.     Delta G=-17.10 kcal/mol
Antiterminator: Size=29 nt.     Delta G=-14.60 kcal/mol
Anti-antiterminator:   Size=32 nt.     Delta G=-17.10 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

ATGAAGTGAAAGAGGGGTGAcgataagtccccttctttttt

    BCp0001 --- BCp0002 --- BCp0003 Gene: BCp0001     GI: 29899112     BI number: BCp0001     GOG: -------     Description: hypothetical protein Gene: BCp0002     GI: 29899113     BI number: BCp0002     GOG: -------     Description: hypothetical protein Gene: BCp0003     GI: 29899114     BI number: BCp0003     GOG: -------     Description: hypothetical cytosolic protei   t                   t a  a                a  a g  a       tt       g  a cg       t  G       cg At        tA        At Gc        tA        Gc T  |       tA       T  | Gc        cG        Gc Gc        tA        Gc Gc        tG        Gc Gt        cG        Gt At        cG        At Gc        cG        Gc At       |  T       At At        cG        At At        tA        At Gt        gc        Gt                         ttttttt     ..................................................................................................................