Gene putatively regulated by attenuation in B_cereus_ATCC14579_pl-pBClin15
Characteristics of the secondary structures
Terminator: Distance to gene:18 nt. Distance to run of Ts=0 nt. Size=24 nt. Delta G= -9.50 kcal/mol
Antiterminator: Size=37 nt. Delta G= -4.81 kcal/mol
Anti-antiterminator: Size=46 nt. Delta G=-10.20 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
TTGAACTCGTGTTTAACCAAGCTGACACGCCTTACAATATCGACCCGTTAGCGTTGAC
ACATTTAAATCATATGCAACTCGGTTACCCACTCCCAAAAGGAATGTATGTCTTTGAC
TTCAGTAACCAAGGTATTACAAATCTAGGTGGTAGCCGTGACTATATTGATACAGAAC
GTCTAACAGAATTCTGGGTACGTTTCGGGTCACAAAAACCGGGTCGTATTACGGTAGT
TTCTGAAACATTATCAAGATTACGATAAggggctttgctcctttcgttttctataaggaggaaaacaaATG
BCp0011 --- BCp0012
Gene: BCp0011 GI: 29899122 BI number: BCp0011 GOG: ------- Description: hypothetical membrane spanning protein
Gene: BCp0012 GI: 29899123 BI number: BCp0012 GOG: ------- Description: hypothetical protei
GT
C A
T T
G T AT
G A G T
GC A A
CG A C
CG CG
AT TA
A A AT
A | TA
A | T |
A | A | t
CG C | t t
AT A | cg
C T A | gc
T | A | gt
GT G | gc
GC TA gc
GT Cg At
CG T g At
TA T g T |
TA Tg At
TA Gc Gc
GC At Cg
ttttctataaggaggaaaacaaATG
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