                                                                        Gene putatively regulated by attenuation in B_cereus_ATCC_10987

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:210 nt.     Distance to run of Ts=0 nt.   Size=26 nt.     Delta G=-13.60 kcal/mol
Antiterminator: Size=34 nt.     Delta G= -3.90 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

GCGGGATTGAAACAAGGGGGATTTTACGAACTGGATTACCTTTTCAACATTATGAAGA
ATAAgcaaggtacatatgtatcttgcttttttgtatggaaaggatttaaatcagtttggataaaaagagacaagaacgcacagactacataatgata
cttttacaatatagtatttcttctatctattcgaacgcatgatgcttttataatgatattgtctgtgagttgcggttaataattgggatagatatatcgt
gttttaagtgttcaatctaaattacagcgaggtgtaacgaagtatATG

    BCE0041 Gene: BCE0041     GI: 42779122     BI number: BCE0041     GOG: COG4466     Description: veg protei AT C  T A  A AT CG TA TA |  G |  A       ta |  A      a  t |  T       cg |  A       at |  A       ta |  g       gt |  c       gc Ta        at Ta        at Cg        cg Cg        gc At        At Ta        At             ttttgtatggaaaggatttaaatcagtttggataaaaagagacaagaacgcacagactacataatgatacttttacaatatagtatttcttctatctattcgaacgcatgatgcttttataatgatattgtctgtgagttgcggttaataattgggatagatatatcgtgttttaagtgttcaatctaaattacagcgaggtgtaacgaagtatATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [S] COG4466 Uncharacterized protein conserved in bacteria ... can be seen here     ..................................................................................................................