Gene putatively regulated by attenuation in B_cereus_ATCC_10987
Characteristics of the secondary structures
Terminator: Distance to gene:116 nt. Distance to run of Ts=0 nt. Size=19 nt. Delta G= -9.40 kcal/mol
Antiterminator: Size=71 nt. Delta G=-11.50 kcal/mol
Anti-antiterminator: Size=50 nt. Delta G= -4.80 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
TATAAGCGAAATAGAGCACAAGGCGGTCAATACTGCTGCCAGTTTCTTAGCGAAACAA
ATGGAACAGTAAaggtgtatggttttagaagtagcaatctttcctaattatgatatttcttcttgagaaatcaattatttggagatatatg
tatattgaatgaaggtagcgctttgctaccttttttcattgaatatttctagcgttgcacgaacgtattcttacttgtgtaggtaaggaagcttgtcctt
ttctttatgatataatacgaggggtgagaatagaaaaaggagttttcttgcATG
BCE0053
Gene: BCE0053 GI: 42779134 BI number: BCE0053 GOG: ------- Description: stage V sporulation protein B, putativ
aa
g a
at
gc
ta
ta
| t
| t
| a
| t
| t
| t
c cg
g a tg
a a ta
t t cg
gc ta
at t t
at ta
| t at
| c ta
gc at
at | g
ta gt
ta ta
| t at
t t ta
ta t t
gt a t
g g a g t
ta t a c t
at c a g t
ta c t cg
gt tg gc
t t ta at
gt ta ta
gc cg gc
at tg gc
At at at
tttttcattgaatatttctagcgttgcacgaacgtattcttacttgtgtaggtaaggaagcttgtccttttctttatgatataatacgaggggtgagaatagaaaaaggagttttcttgcATG
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