Gene putatively regulated by attenuation in B_cereus_ATCC_10987
Characteristics of the secondary structures
Terminator: Distance to gene:89 nt. Distance to run of Ts=0 nt. Size=32 nt. Delta G= -9.20 kcal/mol
Antiterminator: Size=46 nt. Delta G= -5.63 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
TAAGCGATTTAGAAAGAAAAGTGCTTTCTTTATATCTAGACGGCCGTTCTTATCAAGA
GATTTCGGAACAGTTAAATAGACATGTGAAATCTATTGATAACGCTTTACAGAGGGTG
AAGCGGAAATTGGAACGATATATGGAAATGCGAGAGAGTACTACTTTAAATTCATAAc
aagtactacaggtgtaaaaatcacctgttttctttttgtagggagtacaaaaggcatgacattgacattgtcttttattgtatgatacatttttagggac
ataatgttacaaggttggtgtaactaATG
BCE0092 --- sigH
Gene: rpmG GI: 42779175 BI number: BCE0094 GOG: ------- Description: ribosomal protein L33
Gene: BCE0095 GI: 42779176 BI number: BCE0095 GOG: ------- Description: preprotein translocase, SecE subuni
T
A T
A C
A A
T T
T A
T A
C c a
A a a a
Ta a a
Cg t t
At gc
Ta ta
Gc gc
At gc
| a at
G c cg
A a at
G g t t
A g c t
Gt a t
Cg t |
Gt gc
Ta at
ttttgtagggagtacaaaaggcatgacattgacattgtcttttattgtatgatacatttttagggacataatgttacaaggttggtgtaactaATG
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