Gene putatively regulated by attenuation in B_cereus_ATCC_10987
Characteristics of the secondary structures
Terminator: Distance to gene:50 nt. Distance to run of Ts=0 nt. Size=26 nt. Delta G=-11.70 kcal/mol
Antiterminator: Size=68 nt. Delta G= -6.80 kcal/mol
Anti-antiterminator: Size=29 nt. Delta G= -3.30 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
GACGGGGAAATTGCTAAAATACCACAAGGACTAAAAGAAGAATTAAGTATCTATTTTG
CAAAAATGCGGGAAAAGGGAAACATTATTGATACGAATATTGAAGCGCAAGTAATGAA
CTTTATCTGGATCAATTTTGGATATTTCTTATCTAAATTACGTTTTGCTGATCGCCTG
ACAGAAGTTGATGATGAGAAATTTATTGAAAATAATATTGTTTTATATGCTAGGGCAT
TAAGACCCTAGtatttatttaaaataaaatgcaagtatgtacttgcttgctaaaaggagagcgggaagATG
BCE0213
Gene: BCE0213 GI: 42779294 BI number: BCE0213 GOG: ------- Description: conserved domain protei
AA
A A
GT
TA
TA
AT
TA
T T
T T
A G
A |
AT
GT
AT
GT
TA
AT
G A
T T
A |
G |
T |
TG
GC
GA AT
A A A A
CG G | TA
AT A | T A
GT C | A G
TG A | C A
C A G | GC
C | TG GC
GT CG GC
CG CG AT
TA GC TA
AT C | CG
G G TA Gt
TA AT Ta
CG GT At
ttatttaaaataaaatgcaagtatgtacttgcttgctaaaaggagagcgggaagATG
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