Gene putatively regulated by attenuation in B_cereus_ATCC_10987
Characteristics of the secondary structures
Terminator: Distance from promoter:91 nt. Distance to gene:107 nt. Distance to run of Ts=0 nt. Size=28 nt. Delta G=-15.70 kcal/mol
Antiterminator: Distance from promoter:62 nt. Size=43 nt. Delta G= -6.50 kcal/mol
Anti-antiterminator: Distance from promoter:31 nt. Size=45 nt. Delta G=-14.50 kcal/mol
Nomenclature/Definitions
The most likely promoter is: TTGTTA-TAAGTT. It has a score value of 62.25 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
TTGTTATTAATAAACAAGAGCTTGTTAAGTTAAAGCAAGTTATTAGTCGAGTAGATGA
CGATGCTTTCGTCGTTATCCATGATGTACGTGATGTACTTGGCGGAGGCTTTAAAGCG
AGCTAAaaggtgaacgagtaaattcgttcacctttttttaattcttacaaaaatgtaagtgtaatgtaatgagattcaatagtagattgtatttct
tctttttaaaatggatgtatatatatcctgcagaggaggaatgtttattATG
BCE0235
Gene: BCE0235 GI: 42779316 BI number: BCE0235 GOG: ------- Description: conserved hypothetical protei
G
T T
A A GA
GC C G
TG GC
AT AT
C | A A
CG A A
TA Ta
AT Ta
TG Tg
| T Cg aa
| A Gt t a
| C G g gt
T T A a at
GT G a gc
CG G | cg
TG C | at
GC G | at
CG Gc gc
TG Tg ta
TA Ta gc
TG Cg gc
CG At at
GC Ta at
tttttaattcttacaaaaatgtaagtgtaatgtaatgagattcaatagtagattgtatttcttctttttaaaatggatgtatatatatcctgcagaggaggaatgtttattATG
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