Gene putatively regulated by attenuation in B_cereus_ATCC_10987

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:193 nt.     Distance to run of Ts=0 nt.   Size=25 nt.     Delta G=-15.50 kcal/mol
Antiterminator: Size=57 nt.     Delta G= -4.75 kcal/mol
Anti-antiterminator:   Size=30 nt.     Delta G= -3.30 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

CACATGAAACAGAAGATGAAAAATATATGTATAGCTGGATTGAAGAGGGATCATATAC
TGTGAAATAAgtaagaaaaaggcatgctcaataacagagcatgcctttttcatggaatcgacatgtataataataccaaaaaaaattatagaa
agatatatagaaagaatgataaaaatcgtgcatattcataagagtttctacttatttcgacaaaagtattgactgggaaaagtgctatgagtaaaataaa
aaagcgaattaaaaattttcagaaaatttaaaacttggaggagcatgctATG

    BCE0263


Gene: BCE0263     GI: 42779344     BI number: BCE0263     GOG: COG0531     Description: amino acid permeas


            A
          T  C
          A  T
           TG
           AT
           CG
           TA
          |  A
          A  A
          G  T
          G  A
          G  A
          A  g
  G       G  t
A  A      A  a
A  G      A  a
G  G      G  g
 TG       T  a        a
 TA       T  a      t  a
 AT       A  a      a  c
 GC       G  a      a  a
G  A      G  a       cg
T  |       Tg        ta
C  |       Cg        cg
G  |       Gc        gc
 AT       A  |       ta
 TA        Ta        at
 AT        At        cg
 TA        Tg        gc
 GC        Gc        gc
                        tttttcatggaatcgacatgtataataataccaaaaaaaattatagaaagatatatagaaagaatgataaaaatcgtgcatattcataagagtttctacttatttcgacaaaagtattgactgggaaaagtgctatgagtaaaataaaaaagcgaattaaaaattttcagaaaatttaaaacttggaggagcatgctATG
                                                                        Orthologous genes that have a predicted attenuator, grouped in COG families

[E] COG0531 Amino acid transporters ... can be seen here

    ..................................................................................................................