                                                                        Gene putatively regulated by attenuation in B_cereus_ATCC_10987

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:126 nt.     Distance to run of Ts=0 nt.   Size=31 nt.     Delta G=-20.70 kcal/mol
Antiterminator: Size=61 nt.     Delta G= -5.34 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

TGTACTGGTGCAATCGTAGGATACCAACCATTTGGTGGCTTTAATATGTCTGGTACAG
ACTCTAAAGCTGGTGGCCCTGACTACTTAGCACTTCACATGCAAGCAAAAACTACTTC
TGAAACTTTATAAgaaatagtaagagagatcttcgcagtatgcgaagatctcttttttctgcttatatgtggattaagatacatataagca
gaaaaaataatataaggtttacttcagtaaaataaggtatattatattggttgaataaattctctttcaagataagaaaagtaggtgaacaaaATG

    BCE0339 Gene: BCE0339     GI: 42779420     BI number: BCE0339     GOG: -------     Description: conserved hypothetical protei   T C  T A  T A  A A  T G  A TA Cg Ta Ta C  a At Ta Cg At |  a |  a |  g |  a        t A  g      g  a A  a      a  t A  g       cg A  a       gc C  t       cg Gc        ta At        ta At        cg |  c       ta Cg        at Gc        gc Ta        at A  |       gc Cg        at At        gt             ttttctgcttatatgtggattaagatacatataagcagaaaaaataatataaggtttacttcagtaaaataaggtatattatattggttgaataaattctctttcaagataagaaaagtaggtgaacaaaATG     ..................................................................................................................