Gene putatively regulated by attenuation in B_cereus_ATCC_10987
Characteristics of the secondary structures
Terminator: Distance to gene:130 nt. Distance to run of Ts=0 nt. Size=27 nt. Delta G=-14.20 kcal/mol
Antiterminator: Size=45 nt. Delta G=-11.90 kcal/mol
Anti-antiterminator: Size=54 nt. Delta G= -6.30 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
TATACACACAAGCGAACCGAATTAAAGTGCATTCACCAGATAAACTAATGATTAATTT
AGATGGTGAATATGGTGGAGATGCACCGATGGAATTCGAAAATATGTATCATTGTCTG
GAACTATTTGTTCCTGAACATCAAGAGGATGCCCTGTAAaggcatccttttttattatatagaagaattgt
aaatttgaagttagtttgatttttatggtatttttacaattcgtttattttatatccatactttattgatacactggaggagataagagataagagatga
gaggtggggtgttATG
BCE0353
Gene: BCE0353 GI: 42779434 BI number: BCE0353 GOG: ------- Description: haloacid dehalogenase/epoxide hydrolase family protei
GA
G A
T T
AT
GC
CG
| A
| A T
| A A T
| A T T
| T CG
C A AT
AT AT
CG GC
GT GC
TA T T
AT CG
GC TA
| A | A
| T | C T
| T | A G A
| G | T T A
AT GC C a
GC TA Cg
GT TA Cg
| G | G Gc
| G | A Ta
| A A G At
TA CG Gc
GC TA Gc
GT AT At
TA TG Gt
AT GC At
tttattatatagaagaattgtaaatttgaagttagtttgatttttatggtatttttacaattcgtttattttatatccatactttattgatacactggaggagataagagataagagatgagaggtggggtgttATG
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