                                                                        Gene putatively regulated by attenuation in B_cereus_ATCC_10987

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:97 nt.     Distance to run of Ts=0 nt.   Size=37 nt.     Delta G=-22.60 kcal/mol

                                                                        Nomenclature/Definitions

TGTCGATACAACTTGTACACATCTCGGCTGCGAAGTTGAATGGAATAATGGTGATTGT
ACTTGGGACTGTCCTTGCCACGGTTCACGCTTTTCAATTGAGGGAGATGTTATTGAAG
GTCCGGCAGATCAACCGTTAAAACGAGTTGATAATGAGTAAacaaataaagaagttcaacaggattcctg
ttgaacttctttatttgttataaaaccttttcatataaatcccgatacaagaaggaaaatattaacaccaaataaaataatatactcatctacaaattaa
aaggggtgattactATG

    BCE0464 Gene: BCE0464     GI: 42779544     BI number: BCE0464     GOG: -------     Description: benzoate transport protein, putativ            t          a  t           gc           gc           at           cg           at           at           cg           ta           ta           gc           at           at           gc           at           at           at           ta             tttgttataaaaccttttcatataaatcccgatacaagaaggaaaatattaacaccaaataaaataatatactcatctacaaattaaaaggggtgattactATG     ..................................................................................................................                                                                         Gene putatively regulated by attenuation in B_cereus_ATCC_10987                                                                         Characteristics of the secondary structures Terminator:    Distance to gene:104 nt.     Distance to run of Ts=0 nt.   Size=23 nt.     Delta G=-12.50 kcal/mol Antiterminator: Size=79 nt.     Delta G=-10.55 kcal/mol Anti-antiterminator:   Size=56 nt.     Delta G= -7.30 kcal/mol                                                                         Nomenclature/Definitions Bases shared by the antitermination and termination structures are shown in red Bases shared by the anti-antitermination and antitermination structures are shown in green The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined Coding regions are in CAPS, non-coding regions are in lower case TGTCGATACAACTTGTACACATCTCGGCTGCGAAGTTGAATGGAATAATGGTGATTGT ACTTGGGACTGTCCTTGCCACGGTTCACGCTTTTCAATTGAGGGAGATGTTATTGAAG GTCCGGCAGATCAACCGTTAAAACGAGTTGATAATGAGTAAacaaataaagaagttcaacaggattcctg ttgaacttctttatttgttataaaaccttttcatataaatcccgatacaagaaggaaaatattaacaccaaataaaataatatactcatctacaaattaa aaggggtgattactATG     BCE0464 Gene: BCE0464     GI: 42779544     BI number: BCE0464     GOG: -------     Description: benzoate transport protein, putativ            ag           a  a            aa            tg            at           |  t            ac            aa            ca            ac            Aa            Ag           |  g           |  a AA       |  t T  A      |  t TA       |  c GC       | CG       | |  A      | CG       | AT       | AT       | CG       | TA       T AT       G |  A      A |  A      G |  T      T G  G      A A  A       A CG        T GT       A G  A      G   C  A       T         t C  |       T       a  t Ta        G        gc Gc        A        gc G  a       G        at A  |      C         cg A  |       A        at G  |       A        at Ta       A         cg Ta        A        ta At        T        ta Ta        T        gc                         ttctttatttgttataaaaccttttcatataaatcccgatacaagaaggaaaatattaacaccaaataaaataatatactcatctacaaattaaaaggggtgattactATG     ..................................................................................................................