Gene putatively regulated by attenuation in B_cereus_ATCC_10987
Characteristics of the secondary structures
Terminator: Distance from promoter:79 nt. Distance to gene:84 nt. Distance to run of Ts=0 nt. Size=26 nt. Delta G= -9.90 kcal/mol
Antiterminator: Distance from promoter:18 nt. Size=70 nt. Delta G= -8.40 kcal/mol
Anti-antiterminator: Size=54 nt. Delta G= -7.10 kcal/mol
Nomenclature/Definitions
The most likely promoter is: TTGTTA-TACAAT. It has a score value of 63.59 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
TTGTTACAATTCTAGATAAAAAAATTACAATACATAATCCAACATATTTTGAGGAAAT
CTCTATGTGAaaattgtagattgattttttaattcatattgtatattaataaggttctttatatatttataaggaacttttttacgttatcct
ctataaaaagattgtatagtatagtaataatagctaaaatcgataataaaaacaaagtgaagggggagaaggaATG
BCE0478
Gene: BCE0478 GI: 42779558 BI number: BCE0478 GOG: ------- Description: hypothetical protei
tt
t t
at
gt
ta
ta
at
g t
a c
A ta
A A gt
G T ta
GC t t
AT a t
GC a g
T T a |
T | A |
T | Gt
TA Ta
AT Gt
TG Ta
AT At
CG | t
A A | a
A a | a
C a T t at
C | C a t t
Ta Ta at
At Cg ta
At Tg at
Tg A | ta
At At ta
C a At tg
A g Gc cg
Ta Gt ta
At At ta
At Gt gc
Cg Ta gt
tttttacgttatcctctataaaaagattgtatagtatagtaataatagctaaaatcgataataaaaacaaagtgaagggggagaaggaATG
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