Gene putatively regulated by attenuation in B_cereus_ATCC_10987
Characteristics of the secondary structures
Terminator: Distance to gene:16 nt. Distance to run of Ts=0 nt. Size=37 nt. Delta G=-11.90 kcal/mol
Antiterminator: Size=74 nt. Delta G= -3.80 kcal/mol
Anti-antiterminator: Size=58 nt. Delta G= -3.99 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
TTAAACTCTTGGCACCAAGAGAAGCAAACAATCGTTATGGTTACACACGACTTAGATG
AGGCAATCTTGCTTTCGGATCGCGTATTTATTTTATCTCAAAGACCAGCATCAATAGT
TGGTGAGGTACAAGTGAAATTACCTAGGCCGAGAACGATGGATATGTTAACATCACTT
GAGTTAAAGAAGGATAAGGAAGAAATTTTGAGAGTATTAGCACCTTATATGAAAAAAT
AGaaaaagtcttttaacagtttttagtataattactgttaagaggcttttttatatagggggagaaagGTG
BCE0494
Gene: BCE0494 GI: 42779574 BI number: BCE0494 GOG: ------- Description: hypothetical protei
AA
A A
G A
TA
AT
TA
A G
T a
T a
C a
C a
AA A a
G A Cg
AT Gt
AT A |
GT T |
GT T |
A G A |
A A T |
T G Gc
A A At
G G Gt t
G T At g a
A A Gt at
A T Ta ta
G T Ta ta
A A T c t t
A G T a t t
A C A g ta
T A A | gc
T C At at
GC Gt cg
AT At at
GT At at
TA Gt ta
T T G a ta
C A A g tg
AT At ta
CG Ta cg
TA At tg
cttttttatatagggggagaaagGTG
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