Gene putatively regulated by attenuation in B_cereus_ATCC_10987
Characteristics of the secondary structures
Terminator: Distance to gene:78 nt. Distance to run of Ts=0 nt. Size=30 nt. Delta G=-20.20 kcal/mol
Antiterminator: Size=40 nt. Delta G= -9.30 kcal/mol
Anti-antiterminator: Size=60 nt. Delta G= -6.23 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
agaatataaaagagtagtttatactcttaatataacgaatgttaaaggagtgaaaggataaaatgactttatcaactgttcttcaaatggttttagcttg
ataagggagaagtctgcccatttttatcggttaagctaaattgaagacagcaggtaaagaaccttaatccttttttacgataatatgtaatgggtaaggt
gtattcaccttacccattttttatatgcacaattaaaaaaggctttatactgttgctctctctatttagcttatggactataagtagaggagagaaaaaa
ATG
BCE0495
Gene: BCE0495 GI: 42779575 BI number: BCE0495 GOG: ------- Description: ABC transporter, ATP-binding protei
a
a g
a a
ta
gc
gc
at
c t
g a
a a
c t
a c
gc
at aa
at t t
gt a a
t t gt
t t cg
a t at
a a ta
a | ta at
t | t t t t
c | t | gc
g | t | ta
a | t | gc
a | cg gc
t | cg at
t | tg at
g | a | ta
gc at gc
cg ta gc
ta ta gc
at cg ta
ta cg at
ta at at
ttttatatgcacaattaaaaaaggctttatactgttgctctctctatttagcttatggactataagtagaggagagaaaaaaATG
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