                                                                        Gene putatively regulated by attenuation in B_cereus_ATCC_10987

                                                                        Characteristics of the secondary structures
Terminator:    Distance from promoter:58 nt.    Distance to gene:160 nt.     Distance to run of Ts=0 nt.   Size=33 nt.     Delta G= -9.20 kcal/mol
Antiterminator:    Distance from promoter:27 nt. Size=44 nt.     Delta G= -4.00 kcal/mol
Anti-antiterminator:   Size=52 nt.     Delta G= -3.10 kcal/mol

                                                                        Nomenclature/Definitions
The most likely promoter is: GTGACA-AAACGT. It has a score value of 60.24 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

GTGACATTTATGAGCATGTTATGAAACGTGAAACATTCAGCATTAGTGAAATGCAAGC
TATTACAGAAGAATTAGGTACATTAATTAAAAAGTAAaaagcctcgtttatgaggctcttttttatttccaac
aaattcatgacaactcttctctttccctcaagcaactgtaaaatattgtacaatagaagtagaacctcaccttagattttttctccatacatactactca
caaataatagcaacactaccattgctaactgtttttactggaggtgcttacttATG

    BCE0519 Gene: BCE0519     GI: 42779599     BI number: BCE0519     GOG: COG0474     Description: cation-transporting ATPase, E1-E2 famil   T A  G A  C A  A G  A        A TG       T  C GC       G  A AT        GT TA        AT        tt T  T       TA       t  a A  T       TA        gt C  A       AT        cg G  C       AT        ta A  A      G  A       cg CG       A  A       cg TA       A  A       gc TA       G  A       at A  G      A  A      a  | C  A       CG       a  | A  A       AT       A  | A  |       TA       A  | AT        TA       T  | GT       |  a       Gc TA       A  a       At G  G       Ta        At CG        Cg        At AT        Gc        At                         ttatttccaacaaattcatgacaactcttctctttccctcaagcaactgtaaaatattgtacaatagaagtagaacctcaccttagattttttctccatacatactactcacaaataatagcaacactaccattgctaactgtttttactggaggtgcttacttATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [P] COG0474 Cation transport ATPase ... can be seen here     ..................................................................................................................