Gene putatively regulated by attenuation in B_cereus_ATCC_10987
Characteristics of the secondary structures
Terminator: Distance to gene:30 nt. Distance to run of Ts=0 nt. Size=27 nt. Delta G=-11.10 kcal/mol
Antiterminator: Size=77 nt. Delta G= -4.70 kcal/mol
Anti-antiterminator: Size=51 nt. Delta G= -4.40 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
ACTTTGAAAGAAAAGGGGCTGCAGTTGTCATTCGTGATGATAGTGAGGTTTTTGCAAA
AACAGAGGCGTTATTACAAGATGATATGAAGCTTCTTCAAATGAAAGAAGCGATGAAA
AGCATTTATCGCCCAGAGCCAGCTGATCATATTGTGGATACAATTTTGGCAGAAAATC
ATGTAGAACCGAATCATATACCTATTAAATCACCTGCTCTTGCACAATCATTTACTTA
AtatgaaaccctcttttgtatgtttaaagagggttttttattgttttccaagataaagacttatccacATG
BCE0566
Gene: BCE0566 GI: 42779646 BI number: BCE0566 GOG: ------- Description: hypothetical protei
cc
c t
ac
at
at
| t
g t
t g
a t
t a
A
A
T
T
CT C
T T A
CG T
GC T
TA T
| C A |
C A C |
C A T
A T A
C C A
TA C
AT A
AT C
AT G t
TA T a g
T C T t t
A T C g t
T T T t t
C A C | ta
C | G ta
A | T ta
TA C cg
At C ta
Ta A cg
At C | cg
Cg T cg
Ta A at
tttttattgttttccaagataaagacttatccacATG
..................................................................................................................