Gene putatively regulated by attenuation in B_cereus_ATCC_10987

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:162 nt.     Distance to run of Ts=1 nt.   Size=26 nt.     Delta G= -7.80 kcal/mol
Antiterminator: Size=56 nt.     Delta G= -8.70 kcal/mol
Anti-antiterminator:   Size=26 nt.     Delta G= -4.20 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

TTAATCCATGATCGCACAACTTGTTCAGTCATTTCTTCTCCTTGATAACGACCTGATT
TCGCATAAGTCGTTTGAAAATCTTCCCATAGTAATTCAACCCACGCACGAGCTTGCGC
GTAAGAAAGCTTGTCATTTTTGTCTAATAGTTCTTTCGTTAATGCTTCATAAATATCA
TTCATgttctagtctcctttacctaattatcccttcatttctaaaggatagtttcttctattttgcacattctataattgatacttcttcaagaggt
atcaactgatgatgaggagggcgttcgcaATG

    BCE0574 --- BCE0573


Gene: BCE0574     GI: 42779654     BI number: BCE0574     GOG: -------     Description: conserved hypothetical protein
Gene: BCE0573     GI: 42779653     BI number: BCE0573     GOG: -------     Description: hypothetical protei


           CC
          C  A
          T  T
           TA
           CG
          T  T
          A  A
          A  A
           AT
           AT
           GC
           TA
           TA
          |  C
          |  C
          |  C
           TA
 TT        GC
T  C       CG        GT
A  G      |  C      C  A
 GC        TA       G  A
 TA        GC       C  G
|  T      |  G      G  A
|  A      |  A       TA
C  A      A  G       TA
 CG       A  C       CG
 AT       T  T       GC
 GC        AT        AT
 CG        CG        GT
 AT        GC        CG
 AT        CG        AT
                        CATTTTTGTCTAATAGTTCTTTCGTTAATGCTTCATAAATATCATTCATgttctagtctcctttacctaattatcccttcatttctaaaggatagtttcttctattttgcacattctataattgatacttcttcaagaggtatcaactgatgatgaggagggcgttcgcaATG
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