Gene putatively regulated by attenuation in B_cereus_ATCC_10987
Characteristics of the secondary structures
Terminator: Distance to gene:179 nt. Distance to run of Ts=0 nt. Size=21 nt. Delta G= -7.00 kcal/mol
Antiterminator: Size=44 nt. Delta G= -4.20 kcal/mol
Anti-antiterminator: Size=46 nt. Delta G=-12.80 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
GAAGAGCTTTTTTAGAGAAGAATCAGGAGAGAAAATGGCATAAcccctttttaaggggttattttttt
gtaaactttttatttttttagttgacaatgataatgaaaatcattatcatttattcgagaaatgattacattttgaattatatattttggaggagatgta
aagttaaaaagaaaataaattagatgttaatgagtggtcaacttaattggagtggtatctgttttagaaacaataactaaaaaatcatatgttaagaaat
tacaatttatataacttggaggaaagtttaaaGTG
BCE0607
Gene: BCE0607 GI: 42779687 BI number: BCE0607 GOG: ------- Description: internalin, putativ
t
t t
ta
ta
cg
cg tt
cg a t
cg t t
At t t
At t t
Ta t t
At ta
C | cg
G | at
G | at
T | a g
A | ta
A | gc a
A | ta a a
A | ta a t
G | t t gc
At t | ta
Gt t | at
At tg at
Gt ta ta
Gt at at
At ta gc
Cg ta ta
tttattcgagaaatgattacattttgaattatatattttggaggagatgtaaagttaaaaagaaaataaattagatgttaatgagtggtcaacttaattggagtggtatctgttttagaaacaataactaaaaaatcatatgttaagaaattacaatttatataacttggaggaaagtttaaaGTG
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