Gene putatively regulated by attenuation in B_cereus_ATCC_10987
Characteristics of the secondary structures
Terminator: Distance to gene:95 nt. Distance to run of Ts=0 nt. Size=30 nt. Delta G=-14.10 kcal/mol
Antiterminator: Size=71 nt. Delta G=-10.41 kcal/mol
Anti-antiterminator: Size=47 nt. Delta G= -8.60 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
GTGGGAAAAATTAATGATGATCCGAAAAAATAACGGTGAACTTGAAAAGGTTGCAGTC
GGCATCAGTGGAAATATAAGATTAGTAAATGTAGTTGTTGGGCAGCAAATTCATACAG
GTACATTATTAGTTAGGTTGGAAGATGATTTATTAATTACAGGTTGTGAATGAtgagaggt
gtgtagagaggactacacatcttttttgttccatatattacaaaagacacatcgttttttcacaaatcgcacacaagtttttgatatgctccttgtagaa
gatacggttagggaggaaatataATG
BCE0624
Gene: BCE0624 GI: 42779703 BI number: BCE0624 GOG: ------- Description: lipoprotein, putativ
T
T T
A A
G T
T T
A A
G A
A T
A T
G A
GC
TA
C TG
G A G G
A A GT
C A AT
GT TG
GT T T
GC G G
TA A |
| T TA
TA TA
GC AT ag
TA TG g g
TG TA a a
G G At gc
AT Cg at
TA A a ta
GC T g gc
TA G a ta
A | G g gc
AT A | ta
AT Cg gt
TA At gc
GT Tg at
AT At gt
TA Cg at
tttgttccatatattacaaaagacacatcgttttttcacaaatcgcacacaagtttttgatatgctccttgtagaagatacggttagggaggaaatataATG
..................................................................................................................