Gene putatively regulated by attenuation in B_cereus_ATCC_10987
Characteristics of the secondary structures
Terminator: Distance from promoter:155 nt. Distance to gene:16 nt. Distance to run of Ts=1 nt. Size=36 nt. Delta G=-11.40 kcal/mol
Antiterminator: Distance from promoter:126 nt. Size=34 nt. Delta G= -3.14 kcal/mol
Anti-antiterminator: Distance from promoter:87 nt. Size=51 nt. Delta G= -3.90 kcal/mol
Nomenclature/Definitions
The most likely promoter is: TTAAAA-TAGTAT. It has a score value of 60.91 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
TTAAAAAATCAATTGAGGATACATTAGTATGCTGAAATAGCCACTGAATCATTGGACC
AGATAATCCCCATAATGTAGCTCCTGTAATAATCATAATGAGTCCGATACGTCTACCA
TTGTTCATtatcatgtttctcctctctggtatttgattttttatgtgtgacatgataaaaggaattatatataacttctggtactgtaaaaagt
atcagattgtagttttattaaggggtcagatattATG
BCE0646
Gene: BCE0646 GI: 42779724 BI number: BCE0646 GOG: ------- Description: transcriptional regulator, GntR famil
t
c c
t t
cg
cg
| t
| a
| t
| t
t t
cg
ta
| t aa
| t t a
| t aa g a
t t t a ta
t t a a cg
gt g g at
ta t g ta
at a a gt
cg c a gc
t t at ta
a | gt cg
t | ta ta
Tg gt t |
At ta c |
Cg gt at
T | ta at
Ta at tg
Gc ta at
Ta ta ta
gttttattaaggggtcagatattATG
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