                                                                        Gene putatively regulated by attenuation in B_cereus_ATCC_10987

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:173 nt.     Distance to run of Ts=0 nt.   Size=40 nt.     Delta G=-25.00 kcal/mol
Antiterminator: Size=47 nt.     Delta G= -8.61 kcal/mol
Anti-antiterminator:   Size=44 nt.     Delta G= -9.70 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

AAAACGTTGATAAAACACCATTCATataccttatataggtattaggtatgtataataaggggtatattttaataaattaaaa
aacaccaaataaaccctttatttaaagggtttatttggtgtttttataggtgtttaaacttgggaaataattataaaaacataggggtatatttataaaa
ggtcaaaaatagcggttttatgaaaaatagatgaggaatttgaaaaatgtatatgttttttcggtgtgaaattgacttttagtgaagttacgataataat
catgaaagaggtgatatgATG

    BCE0670 --- BCE0671 Gene: BCE0670     GI: 42779748     BI number: BCE0670     GOG: -------     Description: lipoprotein, putative Gene: BCE0671     GI: 42779749     BI number: BCE0671     GOG: -------     Description: hypothetical protei   a         a t  g      t  a tg       t  a at       a  a ta       a  a       tt gt       a  a      a  t g  g      t  c       ta at       a  a       ta ta       a  c       ta at       t  c       cg ta        ta        cg |  a       ta        cg |  t       ta        at |  a       at        at a  a       ta        at tg       a  a       ta tg        ta        at cg        gc        at cg        gc        at at        gc        cg ta        gt        cg at        at        at Ta        at        cg At        ta        at                         ttttataggtgtttaaacttgggaaataattataaaaacataggggtatatttataaaaggtcaaaaatagcggttttatgaaaaatagatgaggaatttgaaaaatgtatatgttttttcggtgtgaaattgacttttagtgaagttacgataataatcatgaaagaggtgatatgATG     ..................................................................................................................                                                                         Gene putatively regulated by attenuation in B_cereus_ATCC_10987                                                                         Characteristics of the secondary structures Terminator:    Distance to gene:184 nt.     Distance to run of Ts=0 nt.   Size=18 nt.     Delta G= -7.10 kcal/mol Antiterminator: Size=47 nt.     Delta G= -8.61 kcal/mol Anti-antiterminator:   Size=44 nt.     Delta G= -9.70 kcal/mol                                                                         Nomenclature/Definitions Bases shared by the antitermination and termination structures are shown in red Bases shared by the anti-antitermination and antitermination structures are shown in green The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined Coding regions are in CAPS, non-coding regions are in lower case AAAACGTTGATAAAACACCATTCATataccttatataggtattaggtatgtataataaggggtatattttaataaattaaaa aacaccaaataaaccctttatttaaagggtttatttggtgtttttataggtgtttaaacttgggaaataattataaaaacataggggtatatttataaaa ggtcaaaaatagcggttttatgaaaaatagatgaggaatttgaaaaatgtatatgttttttcggtgtgaaattgacttttagtgaagttacgataataat catgaaagaggtgatatgATG     BCE0670 --- BCE0671 Gene: BCE0670     GI: 42779748     BI number: BCE0670     GOG: -------     Description: lipoprotein, putative Gene: BCE0671     GI: 42779749     BI number: BCE0671     GOG: -------     Description: hypothetical protei   t         a a  a      t  a tt       t  a ta       a  a cg       a  a cg       a  a a  t      t  c ta       a  a at       a  c Tt       t  c Aa        ta |  g       ta |  g       ta |  t       at C  a       ta Tt       a  a       tt Tg        ta       a  t At        gc        ta Ca        gc        ta Ct        gc        ta Aa        gt        cg Ca        at        cg At        at        cg Aa        ta        at                         ttatttggtgtttttataggtgtttaaacttgggaaataattataaaaacataggggtatatttataaaaggtcaaaaatagcggttttatgaaaaatagatgaggaatttgaaaaatgtatatgttttttcggtgtgaaattgacttttagtgaagttacgataataatcatgaaagaggtgatatgATG     ..................................................................................................................