                                                                        Gene putatively regulated by attenuation in B_cereus_ATCC_10987

This operon is putativelly rgulated by Thiamine_Thi-box

                                                                        Characteristics of the secondary structures
Terminator:    Distance from promoter:158 nt.    Distance to gene:60 nt.     Distance to run of Ts=0 nt.   Size=26 nt.     Delta G=-10.90 kcal/mol
Antiterminator:    Distance from promoter:104 nt. Size=67 nt.     Delta G=-21.00 kcal/mol

                                                                        Nomenclature/Definitions
The most likely promoter is: ttgaca-tatgat. It has a score value of 83.67 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

ttgacagttacatgaagtatgttatgatgaatacaatacgaaaattaaatattttatccactaggggggcctattataggctgagatcaaattggaattt
gagactcttagtacctgatctggttaatgccagcgtagggaagtgggaaagacattgctatttaataaataaaaactgtcaatttcactttctttacgcc
tgtaaagaaagtttttttgttttacagatttaataatggtgggtaaatacttaaattttatacataattggagggacttaaATG

    tenA Gene: tenA     GI: 42781688     BI number: BCE2629     GOG: COG0819     Description: transcriptional activator Ten   a a  t ta ta ta at ta c  a g  a ta ta |  c at cg at gc a  a a  a at gt gt gc ta        cc gc       g  t |  t       cg at        at at        ta gc        ta gt        ta gt        cg at        ta ta        ta gc        ta cg        cg gc        at             ttttttgttttacagatttaataatggtgggtaaatacttaaattttatacataattggagggacttaaATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [K] COG0819 Putative transcription activator ... can be seen here                                                                         Genes that have a predicted attenuator with a riboswitch: Thiamine_Thi-box sequence ... can be seen here     ..................................................................................................................                                                                         Gene putatively regulated by attenuation in B_cereus_ATCC_10987 This operon is putativelly rgulated by Thiamine_Thi-box                                                                         Characteristics of the secondary structures Terminator:    Distance from promoter:160 nt.    Distance to gene:67 nt.     Distance to run of Ts=0 nt.   Size=22 nt.     Delta G= -6.60 kcal/mol Antiterminator:    Distance from promoter:123 nt. Size=67 nt.     Delta G=-21.00 kcal/mol                                                                         Nomenclature/Definitions The most likely promoter is: ttgaca-tatgat. It has a score value of 83.67 and is shown in blue Bases shared by the antitermination and termination structures are shown in red The sequences of the antiterminator and terminator structures are underlined Coding regions are in CAPS, non-coding regions are in lower case ttgacagttacatgaagtatgttatgatgaatacaatacgaaaattaaatattttatccactaggggggcctattataggctgagatcaaattggaattt gagactcttagtacctgatctggttaatgccagcgtagggaagtgggaaagacattgctatttaataaataaaaactgtcaatttcactttctttacgcc tgtaaagaaagtttttttgttttacagatttaataatggtgggtaaatacttaaattttatacataattggagggacttaaATG     tenA Gene: tenA     GI: 42781688     BI number: BCE2629     GOG: COG0819     Description: transcriptional activator Ten   t t  t ac aa cc tt gt t  t c  c at at |  t aa ac ag tc a  c a  t a t a a t t |         cc t       g  t a        cg t        at c        ta g        ta t        ta t        cg a        ta c        ta a        ta             gtttttttgttttacagatttaataatggtgggtaaatacttaaattttatacataattggagggacttaaATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [K] COG0819 Putative transcription activator ... can be seen here                                                                         Genes that have a predicted attenuator with a riboswitch: Thiamine_Thi-box sequence ... can be seen here     ..................................................................................................................