                                                                        Gene putatively regulated by attenuation in B_halodurans

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:205 nt.     Distance to run of Ts=0 nt.   Size=33 nt.     Delta G= -8.50 kcal/mol
Antiterminator: Size=40 nt.     Delta G= -5.30 kcal/mol
Anti-antiterminator:   Size=39 nt.     Delta G= -8.00 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

tagctttaataaaataagaatacgtccaatttgattgtacctggtgatcaaagctcttttgcaatggcgatcagcctgtaattttgcaaattttattcat
atcttcaaacaaaaagaagttcaaatccttacataaatttcatctttttcgtacatgataaatatagacaatcaaccgcgaaaaaaatcgaatttaaatc
gttgacaataacaaggttaagttgatataattttttgtttgcttgacattttcatcctaaccatgttatactattcacagagagaagcggggtgttataa
TTG

    BH0059 Gene: BH0059     GI: 15612622     BI number: BH0059     GOG: COG4466     Description:             g TT       a  c        t a  G      a  t      a  c a  g      a  c      g  a ta       c  t       cg at       t  t       gc t  t       at        gc t  g       gt       |  t gt        tg       |  g ta        gc       |  t gc       g  a      |  a gc       t  a      |  a gt       c  t      |  t g  g      c  g      t  t cg       a  |       at gt        tg        at a  g       gc        cg a  a       tg        gc g  |       ta        ta at        at        ta gc        gc        ta                         ttttattcatatcttcaaacaaaaagaagttcaaatccttacataaatttcatctttttcgtacatgataaatatagacaatcaaccgcgaaaaaaatcgaatttaaatcgttgacaataacaaggttaagttgatataattttttgtttgcttgacattttcatcctaaccatgttatactattcacagagagaagcggggtgttataaTTG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [S] COG4466 Uncharacterized protein conserved in bacteria ... can be seen here     ..................................................................................................................