                                                                        Gene putatively regulated by attenuation in B_halodurans

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:157 nt.     Distance to run of Ts=0 nt.   Size=22 nt.     Delta G=-16.80 kcal/mol

                                                                        Nomenclature/Definitions

GGGAGGCATTCGTGCACGTGATGCAGGAAACATGGTGAAGCGTGCCATTGAGCTTGCT
GAGCAGCAATTAGCAGAGAGAGAATCTTCACGTTAAcaatgttacgatatgttaggggttgggtcaccagccc
cttttttctcttttcaatgggggagggaatcgattaagcgagaaggctcctctcccctgtttcgcccaaaaaaagacagctttcttgtgccatttgttac
acggtctggcttgtttctgtccaaaatgataaaatagcctaagcaaatggaacatagaaggtgaagcgtGTG

    BH0061 Gene: BH0061     GI: 15612624     BI number: BH0061     GOG: COG1947     Description: isopentenyl monophosphate kinas           tc          g  a           gc           gc           ta           tg           gc           gc           gc           gc           at             tttttctcttttcaatgggggagggaatcgattaagcgagaaggctcctctcccctgtttcgcccaaaaaaagacagctttcttgtgccatttgttacacggtctggcttgtttctgtccaaaatgataaaatagcctaagcaaatggaacatagaaggtgaagcgtGTG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [I] COG1947 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase ... can be seen here     ..................................................................................................................                                                                         Gene putatively regulated by attenuation in B_halodurans                                                                         Characteristics of the secondary structures Terminator:    Distance to gene:164 nt.     Distance to run of Ts=0 nt.   Size=20 nt.     Delta G=-15.20 kcal/mol Antiterminator: Size=76 nt.     Delta G=-11.20 kcal/mol Anti-antiterminator:   Size=73 nt.     Delta G=-15.47 kcal/mol                                                                         Nomenclature/Definitions Bases shared by the antitermination and termination structures are shown in red Bases shared by the anti-antitermination and antitermination structures are shown in green The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined Coding regions are in CAPS, non-coding regions are in lower case GGGAGGCATTCGTGCACGTGATGCAGGAAACATGGTGAAGCGTGCCATTGAGCTTGCT GAGCAGCAATTAGCAGAGAGAGAATCTTCACGTTAAcaatgttacgatatgttaggggttgggtcaccagccc cttttttctcttttcaatgggggagggaatcgattaagcgagaaggctcctctcccctgtttcgcccaaaaaaagacagctttcttgtgccatttgttac acggtctggcttgtttctgtccaaaatgataaaatagcctaagcaaatggaacatagaaggtgaagcgtGTG     BH0061 Gene: BH0061     GI: 15612624     BI number: BH0061     GOG: COG1947     Description: isopentenyl monophosphate kinas             t           a  a           g  t            cg            at            tt   G        ta A  C      |  g C  A      |  g G  A      |  g AT       |  g GT       |  t TA       |  t CG       |  g GC       |  g TA       |  g |  G      |  t TA       |  c CG        ga |  A       t |  G       a G  A       a A  G       c G  A      A T  A      A T  T      T A  C      T C  T      G C  T       C GC        A TA        C GC        T CG       | GT       |   AT       T   A  A       C        tc G  |       T       g  a TA        A        gc Gc       A         gc G  a       G        ta Ta        A        tg At       G         gc Cg        A        gc At        G        gc At        A        gc                         ttttttctcttttcaatgggggagggaatcgattaagcgagaaggctcctctcccctgtttcgcccaaaaaaagacagctttcttgtgccatttgttacacggtctggcttgtttctgtccaaaatgataaaatagcctaagcaaatggaacatagaaggtgaagcgtGTG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [I] COG1947 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase ... can be seen here     ..................................................................................................................