Gene putatively regulated by attenuation in B_halodurans
Characteristics of the secondary structures
Terminator: Distance to gene:139 nt. Distance to run of Ts=0 nt. Size=26 nt. Delta G=-12.10 kcal/mol
Antiterminator: Size=42 nt. Delta G= -5.51 kcal/mol
Anti-antiterminator: Size=34 nt. Delta G= -4.00 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
AGGTGTTGTCACCGAACTTTTAGGCGTTCCTTTTATCGTTAGTGGGTGCTTGATGCTT
GGGTGCAGCGTGCTTTTAGTTTGGCTATCGCAAAAAAGGATCACCGAGTCTTATGCTG
TAAAAAGAGGTGCTTAAaccatctggcttttcaggtggttttttcttatgacattaaagagaaaaaagattgcggaaaagcgaacttc
ccgaacaagaaatttgtccaaaagctgtcttgatttccactgcatgagccccgcggttcctctggatactaaagaaaaaagggagtgtgaggagcgATG
BH0238
Gene: BH0238 GI: 15612801 BI number: BH0238 GOG: NOG14037 Description:
TT
C A
G A
Ta
Gc
Gc
| a
At
Gc
At
A A |
A A A |
A A A |
C A A |
G G T |
CG G | tt
TA T | c t
AT C | gt
T C G | gc
C A T | ta
GC A | cg
GC T | tg
TG T | at
TA Cg cg
TG Tg cg
| T Gc at
GC At At
AT Gt At
tttcttatgacattaaagagaaaaaagattgcggaaaagcgaacttcccgaacaagaaatttgtccaaaagctgtcttgatttccactgcatgagccccgcggttcctctggatactaaagaaaaaagggagtgtgaggagcgATG
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