                                                                        Gene putatively regulated by attenuation in B_halodurans

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:134 nt.     Distance to run of Ts=2 nt.   Size=27 nt.     Delta G=-11.20 kcal/mol
Antiterminator: Size=39 nt.     Delta G= -4.50 kcal/mol
Anti-antiterminator:   Size=35 nt.     Delta G=-21.30 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

AATCGTAACGGCAGGAGGCATGATCCGATCCTCGTTACGAAAAATGGCATGAtaactgtgt
aaaggaggtaagggctagcatgttgctagctcttatttcgcattgattaaaggctctctgctgttacctcgagactcagcaatcgctgagctttctctct
gttttcagcccatataaaccttatgtttctttctgagaccaaaaagaacgaaaagattaataaaaccaaaatcacgcaaaacatgaaagcgcttttataa
tgataattgaaagaagattcaaaaaagggggagcaaaaaATG

    BH0601 Gene: BH0601     GI: 15613164     BI number: BH0601     GOG: COG2358     Description:             t           c  c           t  t            cg   g        gc t  t       gt a  t      a  | cg       a  |       at gc       a  |      a  c at       t  |       cg ta        tg        gc cg        at        at gc        gt        cg gt        ta        ta gc       t  c       cg at       a  c      |  c at       c  t      |  t ta        gc       |  t gt        cg        at gt        ta        gc at        tg        at gc        ta        gc                         tctgttttcagcccatataaaccttatgtttctttctgagaccaaaaagaacgaaaagattaataaaaccaaaatcacgcaaaacatgaaagcgcttttataatgataattgaaagaagattcaaaaaagggggagcaaaaaATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [R] COG2358 TRAP-type uncharacterized transport system, periplasmic component ... can be seen here     ..................................................................................................................                                                                         Gene putatively regulated by attenuation in B_halodurans                                                                         Characteristics of the secondary structures Terminator:    Distance to gene:203 nt.     Distance to run of Ts=0 nt.   Size=21 nt.     Delta G=-12.10 kcal/mol Antiterminator: Size=34 nt.     Delta G= -3.50 kcal/mol                                                                         Nomenclature/Definitions Bases shared by the antitermination and termination structures are shown in red The sequences of the antiterminator and terminator structures are underlined Coding regions are in CAPS, non-coding regions are in lower case AATCGTAACGGCAGGAGGCATGATCCGATCCTCGTTACGAAAAATGGCATGAtaactgtgt aaaggaggtaagggctagcatgttgctagctcttatttcgcattgattaaaggctctctgctgttacctcgagactcagcaatcgctgagctttctctct gttttcagcccatataaaccttatgtttctttctgagaccaaaaagaacgaaaagattaataaaaccaaaatcacgcaaaacatgaaagcgcttttataa tgataattgaaagaagattcaaaaaagggggagcaaaaaATG     BH0601 Gene: BH0601     GI: 15613164     BI number: BH0601     GOG: COG2358     Description: gt t  a g  a ta cg |  g a  a a  g        g tg       t  t At       a  t |  a       cg G  a       gc T  g       at A  g       ta Cg        cg Gc        gc Gt        gt Ta        gc             ttatttcgcattgattaaaggctctctgctgttacctcgagactcagcaatcgctgagctttctctctgttttcagcccatataaaccttatgtttctttctgagaccaaaaagaacgaaaagattaataaaaccaaaatcacgcaaaacatgaaagcgcttttataatgataattgaaagaagattcaaaaaagggggagcaaaaaATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [R] COG2358 TRAP-type uncharacterized transport system, periplasmic component ... can be seen here     ..................................................................................................................