                                                                        Gene putatively regulated by attenuation in B_halodurans

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:171 nt.     Distance to run of Ts=0 nt.   Size=25 nt.     Delta G=-14.00 kcal/mol
Antiterminator: Size=38 nt.     Delta G= -4.10 kcal/mol
Anti-antiterminator:   Size=42 nt.     Delta G= -5.30 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

GTTTCTGCACTTGCCGATGGGAGTCATCGGGCATGAAGGAAGTACAATATTAGTCATT
CTAAATGGGCTCAGGCTGTTACGATAAaactatgaaacaactaggcatcgtctatatggcgatgtcttttgttcttccgt
gaacaaaataaacaaaattcgttttatgtgagtaagctttttcgccgtattttttgtatggtatgtttctatatattaaaaaaattgcttcaattcacgc
cttgttttgaaagcgcttaatatttgatagggcgtgtgaagatcgttcaggggggagaaagcATG

    BH0745 Gene: BH0745     GI: 15613308     BI number: BH0745     GOG: COG2851     Description: magnesium citrate secondary transporte   A T  T A  T       aa A  A      A  c CG        At AT        Ta T  C      A  | G  A       Gt AT        Cg AT       A  a        t GC        Ta       a  a GT        Ta       t  t |  A       Gc        cg A  A       Ta        tg A  A      C  a       gc G  T      G  |       cg T  G       Gc        ta A  G       At        at CG       C  a       cg GC       T  g       gt GT        Cg        gc GC        Gc        at                         tttgttcttccgtgaacaaaataaacaaaattcgttttatgtgagtaagctttttcgccgtattttttgtatggtatgtttctatatattaaaaaaattgcttcaattcacgccttgttttgaaagcgcttaatatttgatagggcgtgtgaagatcgttcaggggggagaaagcATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [C] COG2851 H+/citrate symporter ... can be seen here     ..................................................................................................................