                                                                        Gene putatively regulated by attenuation in B_halodurans

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:156 nt.     Distance to run of Ts=0 nt.   Size=37 nt.     Delta G=-19.60 kcal/mol
Antiterminator: Size=33 nt.     Delta G= -5.80 kcal/mol
Anti-antiterminator:   Size=60 nt.     Delta G= -9.05 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

CCCGAAAGAGCAAATGCTCGTTTGGTCTGTCCCAACAACGCTCAGCTGGTTAACGGCA
CTCGTTTGCTTACTTATCGCCAATCTCATTTTCGGATAAaagagaaagcgttccttctcttaaggaaggag
cgttttttgtttttgttaaaaatgtatcatgaagcacgaaatgaatggctttctgaatgataaaaataaaatgaatagtatagtagaaagagagaatctt
ggaatacatttttgtaactgattatatgattaggcttgacgcattaaaaaaacagaaaggatgagtgaccgTTG

    BH0806 Gene: BH0806     GI: 15613369     BI number: BH0806     GOG: COG3254     Description:   T T  A G  A GC TG CG GC A  A C  C T  T C  | GC CG AT                   t AT                 t  a |  T       GG       c  a |  G      C  A       tg C  C      T  T       cg A  T       TA        ta A  T       TA        ta C  A       Ta        cg C  C      A  a       cg C  T       Cg        ta T  T       Ta        tg G  A       Cg        gc T  T       Ta        cg C  C      A  a       gt TG       A  a       at GC       C  |       at GC        Cg        at TA        Gc        gt TA        Cg        at                         gtttttgttaaaaatgtatcatgaagcacgaaatgaatggctttctgaatgataaaaataaaatgaatagtatagtagaaagagagaatcttggaatacatttttgtaactgattatatgattaggcttgacgcattaaaaaaacagaaaggatgagtgaccgTTG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [S] COG3254 Uncharacterized conserved protein ... can be seen here     ..................................................................................................................                                                                         Gene putatively regulated by attenuation in B_halodurans                                                                         Characteristics of the secondary structures Terminator:    Distance to gene:163 nt.     Distance to run of Ts=0 nt.   Size=29 nt.     Delta G=-15.90 kcal/mol Antiterminator: Size=33 nt.     Delta G= -5.80 kcal/mol Anti-antiterminator:   Size=76 nt.     Delta G= -9.85 kcal/mol                                                                         Nomenclature/Definitions Bases shared by the antitermination and termination structures are shown in red Bases shared by the anti-antitermination and antitermination structures are shown in green The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined Coding regions are in CAPS, non-coding regions are in lower case CCCGAAAGAGCAAATGCTCGTTTGGTCTGTCCCAACAACGCTCAGCTGGTTAACGGCA CTCGTTTGCTTACTTATCGCCAATCTCATTTTCGGATAAaagagaaagcgttccttctcttaaggaaggag cgttttttgtttttgttaaaaatgtatcatgaagcacgaaatgaatggctttctgaatgataaaaataaaatgaatagtatagtagaaagagagaatctt ggaatacatttttgtaactgattatatgattaggcttgacgcattaaaaaaacagaaaggatgagtgaccgTTG     BH0806 Gene: BH0806     GI: 15613369     BI number: BH0806     GOG: COG3254     Description:   T T  A G  A GC TG CG GC A  A C  C T  T C  | GC CG AT AT |  T |  G C  C A  T A  T C  A C  C C  T T  T G  A       TT T  T      A  T C  C      C  T        t TG        TC       t  a GC        CG       c  a GC        TG        tg TA       A  A       cg TA        AT        ta T  T       CA        ta G  C       CA        cg C  T       Ga        cg T  |      C  a       ta C  |      T  g       tg GC       A  |       gc TA        Ta        cg AT        Tg        gt AT        Ca        at                         ttttgtttttgttaaaaatgtatcatgaagcacgaaatgaatggctttctgaatgataaaaataaaatgaatagtatagtagaaagagagaatcttggaatacatttttgtaactgattatatgattaggcttgacgcattaaaaaaacagaaaggatgagtgaccgTTG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [S] COG3254 Uncharacterized conserved protein ... can be seen here     ..................................................................................................................