                                                                        Gene putatively regulated by attenuation in B_subtilis

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:123 nt.     Distance to run of Ts=0 nt.   Size=38 nt.     Delta G=-17.50 kcal/mol
Antiterminator: Size=36 nt.     Delta G= -3.80 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

CCAAACCAAGACTATGCGGAAAAGGACTTGCTGGCATCGAACTCTTTAAACCCCCAAA
AAGCACGGATGTTGCTGATGCTTGCGCTTACCAAAACAAATGATCCTCAAAAAATCCA
AGCTTATTTCAATGAGTATTGAagaaaagaaggcgaataagccttcttttttttggctttttaggaccaataatgacctctgaa
tcttaaaatttctttaaaaataagccaaaattaccctttacttaattaatttggtaacgtaatacaattggagaatttgttacaaaaaaaggaggatatt
ATG

    lip Gene: lip     GI: 16077339     BI number: BSU02700     GOG: COG1075     Description: lipas AG        at G  T      a  a TA       g  a AT        cg AT        gc CG        gc TA        at Ta        at Tg        gc |  a       at A  a       at Ta        at Ta        at Cg        gt G  a       at A  a       At A  |       Gt Cg        Tg Cg        Tg             ctttttaggaccaataatgacctctgaatcttaaaatttctttaaaaataagccaaaattaccctttacttaattaatttggtaacgtaatacaattggagaatttgttacaaaaaaaggaggatattATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [R] COG1075 Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold ... can be seen here     ..................................................................................................................                                                                         Gene putatively regulated by attenuation in B_subtilis                                                                         Characteristics of the secondary structures Terminator:    Distance to gene:131 nt.     Distance to run of Ts=0 nt.   Size=24 nt.     Delta G=-12.30 kcal/mol Antiterminator: Size=36 nt.     Delta G= -3.80 kcal/mol Anti-antiterminator:   Size=51 nt.     Delta G= -3.90 kcal/mol                                                                         Nomenclature/Definitions Bases shared by the antitermination and termination structures are shown in red Bases shared by the anti-antitermination and antitermination structures are shown in green The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined Coding regions are in CAPS, non-coding regions are in lower case CCAAACCAAGACTATGCGGAAAAGGACTTGCTGGCATCGAACTCTTTAAACCCCCAAA AAGCACGGATGTTGCTGATGCTTGCGCTTACCAAAACAAATGATCCTCAAAAAATCCA AGCTTATTTCAATGAGTATTGAagaaaagaaggcgaataagccttcttttttttggctttttaggaccaataatgacctctgaa tcttaaaatttctttaaaaataagccaaaattaccctttacttaattaatttggtaacgtaatacaattggagaatttgttacaaaaaaaggaggatatt ATG     lip Gene: lip     GI: 16077339     BI number: BSU02700     GOG: COG1075     Description: lipas AC T  C T  A C  A G  A C  A GC TA TA        AT |  A      T  T C  T       TT G  G       CC TA        GA AT        AA GC        AT T  C       CG        at C  T       CA       a  a GC       |  G      g  a TA       T  T       cg TA        AA        gc |  A       AT        gc |  A       AT        at G  A      A  G       at TA       A  A       gc AT       A  |       at GC        Ca        at GC        Tg        at                         tttttggctttttaggaccaataatgacctctgaatcttaaaatttctttaaaaataagccaaaattaccctttacttaattaatttggtaacgtaatacaattggagaatttgttacaaaaaaaggaggatattATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [R] COG1075 Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold ... can be seen here     ..................................................................................................................