                                                                        Gene putatively regulated by attenuation in B_subtilis

                                                                        Characteristics of the secondary structures
Terminator:    Distance from promoter:49 nt.    Distance to gene:63 nt.     Distance to run of Ts=3 nt.   Size=31 nt.     Delta G= -8.90 kcal/mol
Antiterminator:    Distance from promoter:18 nt. Size=38 nt.     Delta G= -4.30 kcal/mol
Anti-antiterminator:   Size=47 nt.     Delta G= -4.31 kcal/mol

                                                                        Nomenclature/Definitions
The most likely promoter is: TTGAca-tacaat. It has a score value of 84.34 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

TTGAcaccgctttcatgcactgatacaattgcactaggttaatacattgtgatggagaactcggagaccacagcagctctttacggcaaatgtttat
gcacccgtaaagcggtttgttgtggtttttttattctcttcttctctatcatgctttttaatcgtgactttaggaggaatgtgctATG

    glpF --- glpK Gene: glpF     GI: 16077993     BI number: BSU09280     GOG: COG0580     Description: glycerol uptake facilitator Gene: glpK     GI: 16077994     BI number: BSU09290     GOG: COG0554     Description: glycerol kinas   t c  a a  g cg gt         g t  t      a  a t  a       gc a  a       gc a  t      |  a       ta c  a      c  c      t  t a  c       ta        tg t  a       cg        gc a  t      |  c       ta g  t      a  a      a  c t  |      a  g      a  | cg        gc       a  | at        at       c  | cg        gc        gc g  |       gt        gc ta       t  |       cg at        at        at cg        gt        ta tg        ta        ta ta        gc        ta tg        tg        cg                         cggtttgttgtggtttttttattctcttcttctctatcatgctttttaatcgtgactttaggaggaatgtgctATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [G] COG0580 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) ... can be seen here [C] COG0554 Glycerol kinase ... can be seen here     ..................................................................................................................