Gene putatively regulated by attenuation in B_subtilis
Characteristics of the secondary structures
Terminator: Distance to gene:27 nt. Distance to run of Ts=0 nt. Size=36 nt. Delta G=-13.40 kcal/mol
Antiterminator: Size=68 nt. Delta G=-12.20 kcal/mol
Anti-antiterminator: Size=41 nt. Delta G= -6.90 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
GGAAAAATCAAAATTGTCGGTGTATCAAGCGCTGCAATCGTAATGGACAAGCCTGATC
GAAATAGTTCTAAAAATATTGGCACAGTTAAGCTTGGAAGCACTATTTCAATTTCTGG
TTCAGTTAAAGGTAAAAACAATTCCAATGGCTACTGGGAAGTTATTTATAAAGGTAAA
CGTGGATATATCTCGGGACAGTTTGGATCAACAATCTAAttatattcaattttctcggaggatgtttattg
atcaatatgtttcagtaaatatccttttctatggtactaaggtggtgaacattttATG
bhlA --- bhlB
Gene: bhlA GI: 16079201 BI number: BSU21420 GOG: ------- Description: holin-like protein
Gene: bhlB GI: 16079202 BI number: BSU21430 GOG: NOG09437 Description: holin-like protei
A
A C
C A
TA
AT
GC
GT
TA
| A
| t
| t
| a
| t
| a
| t
| t
| c
Ta
Ta
GT Gt
G A At
A A C t
A A At ta
A C Gc a t
TG Gt a g
AT Gc c t
TG Cg t t
TG T | at
TA Cg gc
AT Ta ta
TA | g tg
T T A g at
G A Ta ta
A | At ta
AT Tg ta
GC At gt
GT Gt ta
GC Gt at
TG Ta gc
CG Gt gc
ttttctatggtactaaggtggtgaacattttATG
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