                                                                        Gene putatively regulated by attenuation in B_subtilis

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:187 nt.     Distance to run of Ts=2 nt.   Size=36 nt.     Delta G= -9.00 kcal/mol
Antiterminator: Size=36 nt.     Delta G=-14.60 kcal/mol
Anti-antiterminator:   Size=34 nt.     Delta G= -6.60 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

TTGCGTTTTCTTTAAAGTTAATCAGACAGCTGTTCGTGAAACGAAGCCTGCATGACGC
GCCGATTCAATGGTTCGGGCGGTATGCCTTTGTGCTGCTGGTCATTCTGTTTTTAGCG
CTGATTTCATCTCTCTTTGAAGCATACTTATCTCCTGTTTTAATGGAAAAGCTTACAT
CTAGACTTTTTTAAaatcattattaaaagaaaaccattttatttatcagtttataataattatagttggaactctgcgcgtattttgtta
taatgagtcatggaatgcggcgtaggagggaaagacATG

    fur Gene: fur     GI: 16079409     BI number: BSU23520     GOG: COG0735     Description: transcriptional regulator (Fur family   A         A        CT G  A      A  T      C  T T  A      C  G      G  T GC       T  G       TG CG       T  T       AT TA        AT        TG T  |       GC        GC G  |       CG        GT TA        CG        CG CG       G  |       GC |  C       CG        GT GC        GC       G  G AT        CG       C  G CG       A  G      T  | A  C       GT       T  | G  A       TA        GT AT        AT        GC CG        CG        TA TA        GC        AT                         TCTGTTTTTAGCGCTGATTTCATCTCTCTTTGAAGCATACTTATCTCCTGTTTTAATGGAAAAGCTTACATCTAGACTTTTTTAAaatcattattaaaagaaaaccattttatttatcagtttataataattatagttggaactctgcgcgtattttgttataatgagtcatggaatgcggcgtaggagggaaagacATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [P] COG0735 Fe2+/Zn2+ uptake regulation proteins ... can be seen here     ..................................................................................................................