                                                                        Gene putatively regulated by attenuation in B_subtilis

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:159 nt.     Distance to run of Ts=0 nt.   Size=24 nt.     Delta G= -8.10 kcal/mol
Antiterminator: Size=43 nt.     Delta G= -7.80 kcal/mol
Anti-antiterminator:   Size=51 nt.     Delta G=-14.00 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

GTGAAACCGGGAGATATTGTTGTGACGCAGGACATCGGATTAGCATCTCTGCTGTTGA
ACAGAAATGTCTCTGTTATGTCGGAAAGAGGTCGTCTTTACAAGGAAGACACGATTGA
TTTTGCCCTAGAGGGCCGTCATTTTTCCGGCAAACAAAGAAGAAAAGGCGTATATGCC
AAAGGGCCTAAAAAATTGAATAAAGAAGATCGAGAACGATTTATTACACTGCTGCAAA
AAATCCTGTCGAACGATGAAGGGATTTTGCACTAAagcatcgaataatgtacgacggagtgttataagATG

    dnaG Gene: dnaG     GI: 16079576     BI number: BSU25210     GOG: COG0358     Description: DNA primas TG A  T        A A  C      C  A AT       A  G GC        TG AT        TA CG        TA AT        CG AT        TA |  A       GC G  T      |  A T  G      |  C T  T      |  G GC       |  A TG       |  T       AG CG       |  T      T  A |  A       CG        CG G  A       TA        CG TA        GT        CG CG        GT        GC TA        AT       T  C CG        GT       T  | TG       A  G      T  | AT       A  |       TG |  C      A  |       AT CG        GC        GC GT        GC        TA                         TTTTTCCGGCAAACAAAGAAGAAAAGGCGTATATGCCAAAGGGCCTAAAAAATTGAATAAAGAAGATCGAGAACGATTTATTACACTGCTGCAAAAAATCCTGTCGAACGATGAAGGGATTTTGCACTAAagcatcgaataatgtacgacggagtgttataagATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [L] COG0358 DNA primase (bacterial type) ... can be seen here     ..................................................................................................................