Gene putatively regulated by attenuation in B_subtilis

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:172 nt.     Distance to run of Ts=2 nt.   Size=24 nt.     Delta G= -6.00 kcal/mol
Antiterminator: Size=37 nt.     Delta G= -6.09 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

GATGCTGAACAGCACCTTTGATGTCTATCACAATTGTTTCGTTTGACTCGTCGTTGTT
TGCTTCCTGCTTTACCACTGTATTTTCTGTCTCTGTTGGTACAGCTTGCTTCACCGGC
TCTTTATTTTTCCCTGTGGCCAGAAAGATCATAATCGCTGTGAAAACAGCCGCAGAAG
CCGCTAAAATAATTGCTTTCTTATGCTGATTCAACCAATTCATcgtgcatgttccccgctttcgtcat
attttattttcataacacatatggtttagaggataatagctcaaaggaggggaaaccaTTG

    comER


Gene: comER     GI: 16079614     BI number: BSU25600     GOG: COG0345     Description:



 TC
T  T
T  G
T  T
A  C
T  T
G  C
T  T       TT
 CG       C  G
 AT        GC
|  T       AT
 CG       C  T
 CG       A  C
 AT        TA
 TA        GC
T  C       GC
 TA        TG
 CG        TG
 GC        GC
            TCTTTATTTTTCCCTGTGGCCAGAAAGATCATAATCGCTGTGAAAACAGCCGCAGAAGCCGCTAAAATAATTGCTTTCTTATGCTGATTCAACCAATTCATcgtgcatgttccccgctttcgtcatattttattttcataacacatatggtttagaggataatagctcaaaggaggggaaaccaTTG
                                                                        Orthologous genes that have a predicted attenuator, grouped in COG families

[E] COG0345 Pyrroline-5-carboxylate reductase ... can be seen here

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