Gene putatively regulated by attenuation in B_subtilis
Characteristics of the secondary structures
Terminator: Distance from promoter:106 nt. Distance to gene:121 nt. Distance to run of Ts=0 nt. Size=24 nt. Delta G= -6.50 kcal/mol
Antiterminator: Distance from promoter:70 nt. Size=39 nt. Delta G= -5.60 kcal/mol
Anti-antiterminator: Distance from promoter:31 nt. Size=49 nt. Delta G= -9.20 kcal/mol
Nomenclature/Definitions
The most likely promoter is: ttgctt-taaaat. It has a score value of 69.61 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
ttgcttagtgaaaatgcgaaacccgttaaaatcaaggagattaagaatctttctcaatttcagcacatataaacgctctttcgcatagaaagatagtccc
gttcttgttgtgattcctttgagtataaggacctattgagatttgcggtgtcacgcaggacttttttgcatacttttcggtgaaaaatgagccgaaagca
gacacactattagtaacagatcaaatacctaggactcgttcaccatacacaattcattgatctttcaaaaaaaggagtgtggaaacgATG
degQ
Gene: degQ GI: 16080223 BI number: BSU31720 GOG: ------- Description:
a
c t
g a
cg
ta
ta
ta
cg g
ta a t
| t g a
| a t t
| g ta
| t ta
| c cg
c c cg
gc ta
cg t c gt
at a c t c
at gt g a
a c ta gc
t t gt cg
at t t gc
tg t | ta
| t g | tg
at tg tg
cg ta a a
at cg gc
cg ta at
tttttgcatacttttcggtgaaaaatgagccgaaagcagacacactattagtaacagatcaaatacctaggactcgttcaccatacacaattcattgatctttcaaaaaaaggagtgtggaaacgATG
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