                                                                        Gene putatively regulated by attenuation in B_subtilis

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:175 nt.     Distance to run of Ts=0 nt.   Size=26 nt.     Delta G=-11.00 kcal/mol
Antiterminator: Size=38 nt.     Delta G= -9.20 kcal/mol
Anti-antiterminator:   Size=49 nt.     Delta G=-18.40 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

CTCTCAAAACAGCCTCGGTTCAGCTCATGTGACATTGGCGCGTACACGGCCGAAACTA
ATCGGCGGAGTGCGGGCGGTTTATGAGTGCGAATGAaaggactgcatagccagtcttttcttttattttaaga
tagtgaaataaattccgaactttaaattaaatttaagttattaatattcgtttttaccaataaaaatttagattttttaaaaataatcttttacatcggc
cttaaaaaccatgtacaatagtgatggtaaaaacaaagaacaggatacggataggagaggatctcgctgATG

    glyA Gene: glyA     GI: 16080743     BI number: BSU36900     GOG: COG0112     Description: serine hydroxymethyltransferas CT A  A A  A AT GC CG CG GC        TG G  G      G  C C  G      A  G A  A      G  A CG        TA AT        AT TG        TG        ta GC        TA       a  g CG        Ta       c  c G  G      G  a       gc CG       G  g       ta GC       C  g       cg G  G      G  a       at T  |       Gc        gc T  |       Gt        gt A  |       Cg        at CG        Gc        at AT        Ta        At GT        Gt        Gc                         ttttattttaagatagtgaaataaattccgaactttaaattaaatttaagttattaatattcgtttttaccaataaaaatttagattttttaaaaataatcttttacatcggccttaaaaaccatgtacaatagtgatggtaaaaacaaagaacaggatacggataggagaggatctcgctgATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [E] COG0112 Glycine/serine hydroxymethyltransferase ... can be seen here     ..................................................................................................................